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Aquatic Conservation: Marine and Freshwater Ecosystems

○ Wiley

Preprints posted in the last 90 days, ranked by how well they match Aquatic Conservation: Marine and Freshwater Ecosystems's content profile, based on 12 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

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Fishery Cooperatives as Institutional Intermediaries in Fragile Contexts: Assessing Social-Ecological Resilience in South-Central Somalia

Madar, A. A.; Hadaaf, O. H.

2026-07-28 ecology 10.64898/2026.07.25.740677 medRxiv
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Small-scale fisheries provide essential coastal livelihoods in developing regions, yet they often confront severe institutional voids within fragile-state contexts. Adopting a social-ecological systems framework, this study addresses three sequential objectives: characterizing the contemporary institutional and demographic status of fishery cooperatives across the five South-Central Federal Member States in comparison to their late-1980s historical peak; ranking the socio-economic, infrastructural, regulatory, and environmental impediments to cooperative efficacy; and evaluating the contributions of these cooperatives to sustainable fisheries development. This investigation analyzes how fishery cooperatives act as institutional intermediaries to bolster economic resilience within the Somali coastal economy--a sector central to the National Transformation Plan, despite persistent regulatory fragmentation. Through semi-structured qualitative interviews with key informants--analyzed via reflexive thematic analysis and chi-square testing of age-cohort structure--the study finds that illegal, unreported, and unregulated fishing and inadequate post-harvest infrastructure are the principal constraints, whereas training, education, and community collaboration constitute the primary contributions. The results characterize these cooperatives as hybrid institutions that compensate for limited central-state capacity in remote coastal settlements while serving as intermediaries for the Federal Ministry of Fisheries and Blue Economy where co-management mandates are implemented. By extending the actor-community dimension of the SES framework to include age-cohort structure, this research demonstrates that clan-based reciprocal arrangements can serve as functional substitutes for Ostroms first design principle in contexts of persistent fragility. The study recommends multi-stakeholder partnerships to advance targeted capacity-building, financial literacy, and technological integration, and suggests future research into the post-harvest and retail sectors to examine the role of women in the Somali blue economy.

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Why are fishers retaining manta and devil ray bycatch?

Chopra, M.; Karnad, D.; Rowlands, G.; Stevens, G. M. W.; Nagam, T. A.; T., M.; Fernando, D.; Laglbauer, B.; Davis, K. J.

2026-09-03 ecology 10.64898/2026.09.01.748649 medRxiv
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Increasing fishing pressure, including from small-scale fisheries, has caused declines in more than one-third of all elasmobranch species. Tackling conservation issues in small-scale fisheries requires interdisciplinary approaches due to the coastal community's interdependence on marine resources. To support inclusive policy change and fisher engagement, an understanding of the motivations driving fishers' operational choices (i.e., the retention of elasmobranch bycatch) is needed. We assess the motivational drivers behind bycatch retention of one of the slowest-growing and most vulnerable elasmobranch groups, manta and devil rays (collectively, mobulids), through a case study in India, their largest fishery in the world. We conducted a best-worst scaling survey in the fishery-intensive states of Tamil Nadu and Andhra Pradesh, which make significant contributions to mobulid landings on India's east coast. Our results suggest that fishers exhibit varied motivations for retaining mobulid bycatch across states. Financial motivation to sell mobulids for additional revenue was the most important motivator for bycatch retention in both states. In Tamil Nadu, the top three motivators were all financially driven, whereas in Andhra Pradesh, the top three motivators included both financial and non-financial attributes, such as nutritional importance and storage optimisation. As the first socio-economic study of mobulid fisheries in India, we show that motivations underlying bycatch retention decisions vary geographically and may be influenced by cultural differences between states and the socio-economic characteristics of decision makers. Based on identified fisher motivations, we provide context-specific recommendations to align conservation strategies with the values fishers derive from the mobulid fishery and encourage participation in conservation. These include subsidies for net repair to encourage mobulid release; promotion of a minimum price measure for sustainably sourced alternative species; quality improvement of target species; and increased awareness of national and international regulatory obligations (e.g., CITES, CMS, IOTC).

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Decline in Kappaphycus alvarezii invasion in the Gulf of Mannar, India

Srikanth, Y. V.; Pulla, S.; Namboothri, N.; D'Souza, E.

2026-08-09 ecology 10.64898/2026.08.04.742698 medRxiv
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Blue Economy models position aquaculture as a key pathway to securing global food security. Species selected for aquaculture typically show rapid growth, high stress tolerance and fast biomass accumulation, but these same traits may increase their potential to become invasive when introduced beyond their native range. We investigated the invasion history and current status of the commercially important red seaweed Kappaphycus alvarezii in the Palk Bay-Gulf of Mannar region of India. This is one of the worlds largest cultivation hubs, a climatically vulnerable marine biodiversity hotspot, and one of the three regions to report invasion. We combined in-water surveys, interviews with wild seaweed collectors, and a review of published literature to reconstruct the history of invasion and assess current status. Invasion has declined substantially, with interviews indicating that the disappearance of invasive populations began around 2014. We discuss several non-mutually exclusive explanations for this decline, including climate change, loss of coral substrate, herbivory, and reduced vitality of the seaweed. Although the decline in invasion is encouraging for coral reefs, our findings raise questions about the ecological and socioeconomic consequences of introducing non-native aquaculture species under Blue Economy initiatives, particularly in ecologically sensitive regions vulnerable to climate change.

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A first description of the ichthyofauna of the Namibian Islands Marine Protected Area using baited remote underwater video systems

Leeney, R. H.; De Vos, L.; Simataa, M. A.; van Wyk, A.; Brand, H.; Wilhelm, M. R.; Bernard, A.

2026-09-16 zoology 10.64898/2026.09.14.751173 medRxiv
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Data on the diversity, relative abundance and distribution of the ichthyofauna of Namibia's only marine protected area, the Namibian Islands Marine Protected Area (NIMPA), are limited and there is no active monitoring programme in place. Generating a baseline for these species is essential to inform management plans and policy. Baited remote underwater video system (BRUVs) surveys were conducted between 2022 and 2024 in the central eastern NIMPA. Data from 114 BRUVs samples, collected in water less than 45 m deep, were analysed in this study. Of the 17 fish species recorded, five were elasmobranchs, and three fish species - Galeorhinus galeus (CR), Notorynchus cepedianus (VU) and Argyrosomus inodorus (VU) - are classified as threatened on the IUCN Red List. The most frequently recorded elasmobranch, Haploblepharus pictus, was ubiquitous and typified all habitat types and depth categories. The most frequently recorded actinopterygian fish (Clinus spp.) was sighted at 37% of sites. Depth was an important predictor of fish species abundance and community composition, but habitat was not. Both ichthyofaunal relative abundance and diversity appeared lower than in similar surveys in neighbouring South Africa and other temperate waters. Future research should aim to identify the drivers of the observed patterns. The findings provide an important baseline for long-term monitoring of the NIMPA, necessary to better describe biodiversity and inform the development of management strategies.

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Fishing pressure impacts on anchovy and hake off Peru

Hill, M.

2026-09-30 ecology 10.64898/2026.09.28.754961 medRxiv
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The Peruvian anchovy (Engraulis ringens) is a small pelagic fish. It is the largest singlespecies fishery in the world and it is used mainly for the production of fishmeal and fish oil. The Peruvian hake (Merluccius gayi) is a predatory demersal fish that is valued for direct human consumption, mainly as frozen products. In this study, I compared the response of both species to certain fishing mortality scenarios using a climatological set-up of the multispecies model OSMOSE for the northern Humboldt Current System. I observed that hake landings benefit from a decreased fishing pressure. In addition, the resilience of the anchovy fishery may increase if a higher threshold for their minimum catch size was implemented. The results of this study provide insights into better management strategies that could be beneficial for the two species based on their life-strategies.

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The emerging medium-scale: Prioritising fisheries management for elasmobranch conservation.

Chopra, M.; Karnad, D.; Rowlands, G.; Stevens, G. M. W.; T., M.; Davis, K. J.

2026-09-03 ecology 10.64898/2026.09.02.748653 medRxiv
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Fishing pressure has substantially increased over time and elasmobranchs are among the most vulnerable marine taxa impacted. 'Small-scale' and 'large-scale' are terms frequently used to describe fisheries, yet definitions used across the globe are inconsistent. The global impact of small-scale fisheries on elasmobranch decline is increasingly evident. However, ambiguous vessel-capacity classifications undermine effective conservation management. Technological advancements have led to the emergence of medium-capacity vessels that sit between small and large-scale classifications, creating regulatory gaps that increase bycatch impacts on vulnerable elasmobranchs. Beyond vessel size, the gear specificities and practices also affect interaction with species caught incidentally, and can alter bycatch risk for vulnerable elasmobranchs. Manta and devil rays (collectively, mobulids) represent a pelagic ray group that includes species listed as Critically Endangered with high risk of extinction, largely due to bycatch threats. To prioritise fisheries management for conservation, we assess the contribution of fishing gear specifications and practices to mobulid bycatch as a case study in their largest fishery globally. We use a Huber-robust extension to a Hurdle negative binomial model to assess the impact of fishery characteristics and operational specificities on mobulid bycatch risk. We find that within the Food and Agriculture Organization (FAO) of the United Nations' broad international fleet classification of small-scale vessels based on overall length ([≤]24 m), the 'medium-capacity vessels' in India are twice as likely to catch mobulids than small-scale vessels. Further, increased fishing intensity, measured in five-day increments, doubles mobulid bycatch risk. Our results indicate the emergence of a distinct medium-capacity fishery class in rapidly developing blue-economy nations, shaped by rising technological capacity and exemptions from large-scale management measures. We propose a comprehensive re-conceptualisation of small-scale fisheries to ensure that advanced medium-capacity vessels are subject to management measures commensurate with their bycatch impact. Our recommended re-conceptualisation is complementary to FAO's SSF characterisation matrix and would promote fishery-level sustainability and enable bycatch risk mitigation for elasmobranchs, including manta and devil rays. Further, for congruence between elasmobranch demography and regulations, we recommend that fisheries management measures distinguish vessel capacities for elasmobranch bycatch risk and apply biologically relevant regulations to the associated fisheries scale.

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Range expansion of the invasive barnacle Balanus glandula into the Wadden Sea, its habitat and parasite fauna compared to established barnacle species

van Ooijen, R.; Buring, R.; Cornelius, A.; He, H.; van Oevelen, D.; Thieltges, D. W.; Hammoud, C.

2026-08-26 ecology 10.64898/2026.08.25.747026 medRxiv
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The impact of invasive species on marine ecosystems is rapidly increasing, where they often outcompete native species in the absence of natural enemies. The parasite release hypothesis states that the success of invasive species relates partly to the loss of natural parasites during introduction and lower susceptibility to native parasites. Barnacles are highly successful invaders due to broad environmental tolerance and dispersal via shipping, but whether parasite release also participates in this success remains unknown. In this study, we analyse parasite infection patterns in native and invasive barnacles in the Wadden Sea by surveying communities across tidal zones. Additionally, year-round molecular monitoring of larval stages and a literature review were used to track the distribution of the invasive Pacific barnacle Balanus glandula in Europe and document its appearance in the Wadden Sea. The long-established invasive Austrominius modestus dominated the high and middle intertidal zone, whereas native species (Balanus crenatus and Amphibalanus improvisus) prevailed in lower zones. Native and invasive barnacles differed in parasite infection frequency (mostly cestodes and trematodes). The native Semibalanus balanoides had the highest prevalence (27%), followed by the invasive A. modestus (11%), and no infections were found in B. glandula. Lower parasite prevalence in invasive barnacles is consistent with the hypothesis that parasite release supports invasion success. In the absence of competent parasites, B. glandula could impact native barnacles through competition. Continued monitoring of B. glandula is recommended to track its distribution, interactions with native species, and parasite acquisition, providing further insight into the parasite release hypothesis.

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Pumping stations negatively affect the distribution of critically endangered European eel (Anguilla anguilla); a landscape-scale study using environmental DNA metabarcoding

Monaghan, A. I. T.; Griffiths, N. P.; Sellers, G. S.; Lawson Handley, L.; Nunn, A. D.; Hänfling, B.; Macarthur, J. A.; Wright, R. M.; Cattaneo, M.; Bolland, J. D.

2026-09-01 ecology 10.64898/2026.08.28.746846 medRxiv
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Context Pumping stations pose a threat to fish globally through land use change, habitat fragmentation and entrainment risk, with the catadromous and critically endangered European eel particularly impacted. Objectives/methods Establish, model, assess and understand the present-day distribution of European eel and resident fishes in 152 pumping station catchments in a once extensive wetland (The Fens) using eDNA metabarcoding (855 samples over two and half years), with specific focus on anthropogenic influences on hydrological connectivity and habitat quality. A removal survey design maximised confidence in negative results while minimising time and consumable costs. Results Eel occurrence upstream of pumping stations was low (occupancy = 28.3%) and positively associated with catchment area, fish species richness and natural hydrological connectivity (gravity drainage or flooding) and negatively associated with distance from the tidal limit. Fish species richness replaced catchment area and improved model performance, potentially acting as a biotic indicator of habitat quality and connectivity. Pumped catchments with manually operated upstream water transfers had reduced eel presence, potentially linked to the direction of water flow or the timing of operation. By contrast, fish species richness increased in these catchments during summer, suggesting displacement into unsuitable long-term habitats. Physical habitat maintenance had no detectable effect on eel occurrence or fish species richness. Conclusions This study provides the first landscape-scale assessment of European eel distribution and drivers of occurrence in pumped river catchments. The highly novel and comprehensive insights have implications for European eel conservation as well as infrastructure and catchment management, including compliance with legislation (EC Regulation No. 1100/2007).

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Assessing seabird and shorebird vulnerability to offshore wind farms in Brazil: A decision-support framework for environmental licensing

Horn, N.; Nunes, G. T.

2026-09-30 ecology 10.64898/2026.09.29.755444 medRxiv
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Environmental concerns and the need to mitigate the effects of climate change have driven the adoption of renewable energy sources, such as offshore wind farms (OWFs), making it essential to assess their overlap with seabird habitats to estimate potential impacts. This study is the first to estimate the vulnerability of coastal and seabirds to OWFs at a national scale by integrating biological trait data from the literature, spatial occurrence records from citizen science platforms, and expert knowledge (elicited from 23 specialists) into established quantitative risk frameworks. Collision risk and susceptibility scores were calculated at the family and subfamily levels, as well as disturbance and displacement indices by species and susceptibility by state. The groups with the highest collision risk and susceptibility were Fregatidae (0.354; 0.486), Sulidae (0.199; 0.419), Sterninae (0.190; 0.384) and Diomedeidae (0.190; 0.416). The extreme risk for Fregatidae is driven by their specific flight characteristics, with impacts concentrated in the highly frequented southeast and northeast regions. Regarding disturbance and displacement, Limnodromus griseus exhibited the highest national score (MMA: 0.098), while Diomedea dabbenena had the highest global score (IUCN: 0.092), highlighting the critical need to integrate both regional and global conservation statuses. Spatially, the state exhibiting the highest overall vulnerability to OWF impacts was Rio Grande do Sul (23.78; 10.69), a critical hotspot characterized by high species richness and oceanographic productivity. These findings establish an indispensable national baseline for Marine Spatial Planning, reinforcing the need for targeted pre-installation assessments, the identification of sentinel species, and spatially differentiated management during environmental licensing processes.

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Abundance and trends of harbor seals (Phoca vitulina richardii) in Alaska, 1996-2023

Boveng, P. L.; Brady, G. M.; Cameron, M. F.; Christman, C. L.; Dahle, S. P.; Hiruki-Raring, L. M.; Jansen, J. K.; Koslovsky, S. M.; London, J. M.; McClintock, B. T.; Montgomery, R. A.; Moreland, E. E.; Richmond, E. L.; Simpkins, M. A.; Ver Hoef, J. M.; Walcott, S. M.; Withrow, D. E.; Womble, J. N.; Yano, K. M.; Ziel, H. L.

2026-09-03 ecology 10.64898/2026.09.02.748977 medRxiv
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Pacific harbor seals (Phoca vitulina richardii) were surveyed throughout their range along Alaska coasts over a 28-year period. Twelve management stocks, delineated on the basis of evidence for demographic independence, were monitored for abundance and trends. We employed a two-stage Bayesian hierarchical analysis that integrated aerial survey counts with satellite-linked bio-logger haul-out timelines to account for the proportion of seals in the water and not visible to survey observers and cameras. Overall, harbor seals were abundant (201,122 seals in 2023) but, during the span of our study the population (stock) trends varied. The first half of our study was characterised primarily by growth, with a peak abundance of approximately 225,000 seals in 2015. Since then trends have been variable, with some stocks (e.g., Bristol Bay) showing continued growth while others (e.g. Prince William Sound, South Kodiak) declined. The recent regional declines coincided with observed climate anomalies (e.g., marine heatwaves) and the rapid retreat of tidewater glaciers. Our results provide a basis for managing this species in Alaska, which is protected under the Marine Mammal Protection Act; a vital nutritional and cultural resource for Alaska Native communities; and an important sentinel of change in the Northeast Pacific marine ecosystem.

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Jelly belly: Recovery of fish eDNA from Cassiopea medusae gastrovascular cavities across the Florida Keys

Muffett, K. M.; Sporre, M.; Miglietta, M. P.; Eytan, R.

2026-08-07 ecology 10.64898/2026.08.06.743372 medRxiv
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Ranges of small benthic fauna are notoriously difficult to assess. In some of these cases, modern eDNA methods can shed light on species occurrence. Here we conduct an exploratory study on the fish eDNA recoverable from the gastrovascular cavities of the easy-to-sample pore water siphoning benthic invertebrate, Cassiopea, across six sites within the Florida Keys. Twenty-seven fish 12S identities were recovered from water samples, two from sediment samples, and seventeen from Cassiopea gut swabs. In total, thirty-two different species were identified from nineteen families, including one shark species (Ginglymostoma cirratum), and five species of cryptobenthic reef fishes (f: Gobiidae, Labrisomidae). Additionally, five species were identified from medusae samples that were not recovered in water or sediment samples. The species identities recovered may provide insight into the fish in direct proximity to Cassiopea assemblages, as well as indicate that Cassiopea may accrue disproportionate eDNA from cryptobenthic reef fish compared to surrounding environmental samples. The unorthodox sampling technique of using eDNA recovered from jellyfish stomachs yields another avenue for epibenthic community data acquisition.

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Green turtle satellite telemetry: identifying spatial movements, residency patterns, and habitat associations in Aotearoa New Zealand

Middlemiss, K. L.; Boyle, M.; Vattiato, G.; Chatterton, J.; Naylor, A.; Campana, C.; Christie, A.; Jansen, I.

2026-10-09 zoology 10.64898/2026.10.07.757418 medRxiv
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Sea turtle conservation relies largely on the identification of ecologically significant marine areas. Green sea turtles (Chelonia mydas) are resident in Aotearoa New Zealand waters, yet much of their spatial ecology remains undefined. To address this, satellite telemetry was used to map juvenile and sub-adult green sea turtle spatial movements, residency patterns, and habitat associations. Our findings provide the first evidence of individual fine-scale habitat use and long-term residency in New Zealand waters. Data will contribute to regional and global efforts to identify ecologically significant sea turtle habitat, including Important Marine Turtle Areas (IMTAs) and Blue Corridors for Turtles (BC4T), and help advance conservation efforts.

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Characterizing benthic community structure across Western Pacific seamounts to ~5,000 m depth: Implications for conservation

Huang, J.; Lu, X.; Sun, D.; Fortin, M.-J.

2026-07-31 ecology 10.64898/2026.07.30.741913 medRxiv
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AimSeamounts are key components of deep-sea ecosystems. Yet, their biodiversity patterns and conservation needs remain poorly understood, presenting a critical knowledge gap as they face multiple environmental stressors. Here, we aim to characterize benthic community structure across multiple seamounts along the Kyushu-Palau Ridge (KPR) and identify conservation priorities. LocationPhilippine Sea in the Western Pacific. Major taxa studiedDeep-sea benthos. MethodsWe surveyed six transects (13.3{degrees}N-22.9{degrees}N; 614-5,055 m depth; 165 kilometers in total length) using a towed camera system, yielding 31,342 images and 14,218 identified individuals. Community structure was assessed through species depth-range overlap analysis to distinguish nestedness versus turnover patterns. {beta}-diversity was partitioned into local contributions (LCBD) and species contributions (SCBD) to evaluate site-level uniqueness and species-level influence. Generalized linear mixed models were used to relate LCBD and SCBD to depth, slope, aspect, bathymetric position, and functional traits. ResultsCommunity structures varied among slopes and seamounts. Western, steeper slopes were dominated by nestedness, whereas gentler eastern slopes showed mixed patterns of nestedness and gradual turnover. Sessile species largely exhibited nestedness, while mobile taxa showed mixed structures. LCBD declined with depth overall but increased on north-facing slopes and sites with higher broad-scale bathymetric position. Wide-ranging generalist species, particularly among Echinoidea and Holothuroidea, contributed disproportionately to {beta}-diversity. Main conclusionsSeamount benthic communities along the KPR are structured by interactions between depth, geomorphology, and species ecological breadth. The dominance of nestedness on western slopes suggests that protecting shallow, species-rich habitats could capture much of the biodiversity therein. In contrast, the mixed structures on eastern slopes indicate the need for a hybrid conservation approach that includes both shallow summits and deeper, compositionally distinct zones. Our findings highlight the importance of slope-specific, depth-informed strategies to conserve these vulnerable marine ecosystems.

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Estimating age and annual tooth growth rates in narwhals (Monodon monoceros) using computed tomography

Podolskiy, E. A.; Shimbo, G.; Park, S.-M.

2026-09-01 zoology 10.64898/2026.08.27.747649 medRxiv
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The spiraling tooth of the narwhal (Monodon monoceros) has long intrigued scientists, but the growth rates of its "tusk" are poorly constrained due to the difficulty to age narwhal. To learn more about the population dynamics and life history of this exploited species, previous studies have used sectioned teeth to age narwhals and calibrate other ageing methods based on aspartic acid racemization, radiocarbon or trace element analysis. However, few such studies have been conducted due to the method's difficulty and the need to sacrifice the tooth. In this study, computed tomography (CT) was used on five teeth as a non-destructive means of estimating the age of narwhals, revealing different growth rates between erupted and embedded teeth during adolescence. Moreover, in combination with our reanalysis of all relevant literature, CT data clarify the annual growth rates of narwhal tusks, which peak before the age of 10 (~100 mm yr-1). This approach will be useful for investigating private and museum collections, and might also better constrain the use of trace element proxies in narwhal teeth and support sustainable harvest management.

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Reevaluating Maturity and Spawning Potential of Atlantic Bluefin Tuna in the Slope Sea

LAM, C. H.; Heinisch, G.; Corriero, A.; Lutcavage, M.

2026-08-05 ecology 10.64898/2026.08.04.742198 medRxiv
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The management of Atlantic bluefin tuna (Thunnus thynnus) is currently defined by a long-standing life-history paradox: a stark divergence in maturation schedules between the Eastern and Western stocks. While the Mediterranean contingent matures at approximately 104 cm straight fork length (SFL; age 3-5), the western stock has long been characterized as a late-maturing, at [~]190 cm SFL (age 8+), and as late as age 15.8, based on size-at-catch data in the presumed exclusive spawning areas of the Gulf of Mexico. This discrepancy defies maturity states confirmed by endocrine hormones as well as established life-history principles that link metabolic energetics to reproductive biology. To resolve this critical issue in stock assessment, we present a sensitivity analysis based on the first histological evidence of spawning- capable individuals from 42 bluefin females (97-244 cm curved fork length or [~]95- 236 cm SFL) sampled in June 2025 within the Slope Sea, Northwest Atlantic. This historically overlooked, temperate spawning ground must be recognized and past estimates of stock productivity reevaluated. Our data provide a conservative estimate of length-at-50% maturity, L50 for females at 123.3 cm SFL, effectively reconciling the reproductive parameters of the two stocks based on histology. Our findings align established bluefin tuna metabolic and evolutionary symmetries in life history, irrespective of management boundaries. Incorporating this previously unrecognized spawning group (i.e., smaller, younger fish) calls for a substantial upward revision of Western spawning stock biomass (SSB). This biomass represents an intrinsic biological buffer that could contribute to the Atlantic bluefins adaptation and resilience. Appreciating demographic diversity is critical to accurately diagnosing stock vulnerability, ensuring that management frameworks protect long-term population stability in the face of climate-driven oceanographic shifts and ongoing exploitation pressure.

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Limitation of External Nutrient Supply Effects by Iron-Driven Internal Phosphorus Cycling in Semi-Enclosed Coastal Waters: A Case Study of Mikawa Bay

Ippei, N.; Naruse, K.

2026-09-24 ecology 10.64898/2026.09.23.753643 medRxiv
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The decline in fishery yields in Japan's enclosed coastal seas has been accompanied by a reduction in phytoplankton biomass, suggesting a widespread decrease in ecosystem productivity. Oligotrophication in Mikawa Bay has caused substantial declines in phytoplankton biomass and Manila clam (Ruditapes philippinarum) production. To assess whether external nutrient enhancement could stimulate phytoplankton growth, a controlled demonstration experiment using treated effluent from two sewage treatment plants (WWTPs) was conducted (spanning fiscal years 2022 to 2024) based on analysis using a three-dimensional non-hydrostatic model. Although effluent DIP and nitrogen concentrations were increased, model results showed that WWTP-derived nutrients represent only a minor portion of the total nutrient budget. Field observations revealed limited increases in surface water phosphorus, strong seasonal variability, and only temporary rises in chlorophyll-a and clam harvests. Monthly TP data demonstrated that seasonal DIP pulses, especially spring phosphorus bursts, dominate nutrient dynamics and overshadow external loading effects. Laboratory experiments further showed that phosphate is efficiently fixed by Fe(III) under oxidizing conditions and rapidly released during reductive dissolution of [FeOOH-HPO4]2- complexes, confirming iron as the principal regulator of internal P cycling. Because current numerical models omit iron-driven internal cycling, they cannot accurately predict bioavailable P or ecosystem responses. Overall, the study indicates that localized nutrient enhancement is insufficient to counter long-term oligotrophication, and effective management must integrate nitrogen limitation, internal Fe and P cycling, oceanic exchange, and seasonal variability in Ise and Mikawa Bays.

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Cumulative effects of nylon microplastic fibres and warming temperature on the behavior and physiology of marine threespine stickleback (Gasterosteus aculeatus)

Hajji, A. L.; Lucas, K. N.

2026-08-06 ecology 10.64898/2026.08.05.742354 medRxiv
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Populations are exposed to multiple anthropogenic stressors simultaneously; however, the combined effects are poorly understood. Climate change is starkly impacting marine ecosystems and consequently fishes, with warming temperatures and increases in frequencies and durations of extreme climate events. Concurrently, plastics, such as nylon used in fishing industries, are contaminating marine waters at unprecedented levels, with detrimental effects on fishes. Here we studied the cumulative effects of warming and nylon microplastic fibres on the behavior and physiology of threespine stickleback (Gasterosteus aculeatus) by exposing fish to conditions of 15{degrees}C and 20{degrees}C and nylon concentrations of 0, 1, 10, and 100 mg/g (mg nylon/g food) for 4 weeks. Feeding rates responded complexly to multiple stressors, as increasing concentrations of plastic reduced feeding rates, with warming having an antagonistic effect. Furthermore, we observed "coughing" behaviors in response to ingestion of microfibres and a unique reselection tendency of food items previously selected by conspecifics. Under warming conditions, critical thermal maximum (CTmax) increased; however, exposure to plastics led to reductions in CTmax and thermal safety margins. Given these results, we anticipate reduced acclimation capacities, greater anxiety, and reductions in foraging efficiencies with increasing concentrations of plastic. Cumulatively, these stressors will yield greater energetic trade-offs and decreased accuracy in food selection with stark implications for marine ecosystem dynamics.

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Investigating biotic, chemical, and physical drivers of periphyton and invertebrate biomass in boreal streams supporting juvenile Atlantic salmon

Ranta, M.; Leroux, S.; Adams, H.; Foote, K.; van Miltenburg, N.; Murphy, N.; Hart, A.; Purchase, C.

2026-09-18 ecology 10.64898/2026.09.16.752060 medRxiv
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1. Atlantic salmon (Salmo salar) are an anadromous fish with a broad distribution from eastern North America to western Europe, with ecological, economic, and cultural significance. Despite their expansive range, wild populations across the North Atlantic have experienced decline. Survival to reproductive age is a management concern, with a focus on identifying factors affecting the juvenile freshwater life stage. Specifically, research is needed to identify potential bottlenecks limiting freshwater productivity. 2. We addressed this research gap with a case study on the Exploits River, Newfoundland - a watershed that receives one of the largest anadromous Atlantic salmon returns in North America. We aimed to identify biotic, chemical, and physical predictors of food resources for juvenile salmon (i.e., invertebrates) and food resources for invertebrates (i.e., periphyton). To test our hypotheses, we collected data on a suite of biotic (e.g., invertebrates and periphyton), chemical (e.g., total dissolved N), and physical (e.g., wetted width) variables at 42 sites within and around this watershed. 3. We observed evidence for relationships between invertebrate biomass and biotic and temporal variables. Specifically, invertebrate biomass was higher at sites with high periphyton biomass that were sampled later in the season. In addition, we observed that periphyton biomass was related to biotic, chemical, and physical variables. Here, we present evidence for bottom-up control, with increased periphyton biomass supporting increased invertebrate biomass. 4. We expect knock-on effects where increased invertebrate biomass results in increased juvenile Atlantic salmon biomass. Our large sample size revealed some predictors of invertebrate biomass and periphyton biomass. However, we found no evidence of correlation between invertebrate biomass and chemical or physical variables. The low productivity of our maritime boreal forest system could be an outlier in expected biotic, chemical, and physical relationships in streams. 5. Our findings provide an important step forward in furthering boreal stream ecology, producing novel invertebrate and periphyton knowledge for watershed managers.

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Revision of the Community Conservation Index

Macadam, C. R.

2026-09-03 ecology 10.64898/2026.08.30.748128 medRxiv
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The Community Conservation Index (CCI) developed by Chadd and Extence (2004) has been widely used to assess the conservation value of freshwater macroinvertebrate assemblages by integrating species rarity and community richness into a single metric. However, the original conservation scoring system was based largely on historical rarity designations and regional distribution data that no longer reflect current conservation assessments or recording coverage. This paper presents a comprehensive revision of the Conservation Scores underpinning the CCI. Species scores were updated using the latest IUCN-compliant Red List assessments for British freshwater invertebrates. For taxa classified as Least Concern, Data Deficient, or lacking a recent conservation assessment, scores were derived from national occurrence data across Great Britain for the period 1995-2024 using hectad occupancy. In addition, all non-native species were assigned a conservation score of zero to ensure they do not contribute positively to site conservation value. The revised dataset includes 1,680 taxa, compared with 1,117 in the original index, with 755 taxa receiving Conservation Scores for the first time. Thirty non-native taxa were assigned a score of zero. Among previously scored taxa, 165 received higher scores, 576 received lower scores, and 184 remained unchanged. The predominance of score reductions reflects improved knowledge of species distributions and the replacement of historical rarity classifications with contemporary assessments based on conservation status and national frequency of taxon occupancy. The revised CCI maintains the original strengths of combining rarity and richness while improving transparency, consistency and ecological relevance. By incorporating current Red List assessments, Great Britain-wide distribution data and revised treatment of non-native species, the updated index provides a more robust and nationally representative measure of freshwater macroinvertebrate conservation value. It offers an enhanced tool for biodiversity assessment, conservation prioritisation, site designation and environmental decision-making across freshwater ecosystems in Great Britain.

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Southern (California) Sea Otter Population Status and Trends at San Nicolas Island, 2023-Winter 2026

Tomoleoni, J. A.; Yee, J. L.; Seacord, E.; Staedler, M. M.; Hatfield, B. B.; Carswell, L.; Fujii, J.; Bentall, G. B.; Konrad, L.; Young, C.; Tinker, M. T.; Bowen, L.

2026-08-31 ecology 10.64898/2026.08.28.747881 medRxiv
Top 0.2%
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The southern sea otter (Enhydra lutris nereis) population at San Nicolas Island, California, has been monitored annually since the translocation of 140 sea otters to the island was completed in 1990. Monitoring efforts have varied in frequency and method across years. In 2017, in accordance with the National Defense Authorization Act for Fiscal Year 2016, the U.S. Navy and the U.S. Fish and Wildlife Service formally initiated a sea otter monitoring and research plan to determine the effects of military readiness activities on the growth or decline of the southern sea otter population at San Nicolas Island. The monitoring program, at its basic level, includes quarterly seasonal surveys of population abundance, distribution, and foraging activity. This report presents data from the program with a focus on the recent three years from winter 2023 through winter (February) 2026. From 2023 to 2026, we measured an 8.1-percent per annum decrease in population abundance (95-percent confidence interval =1.1-14.6 percent), with 106 total individuals counted as of February 2026. Historically, sea otter habitat usage at San Nicolas Island was concentrated on the west end of the island. Between 2017 and 2019, we observed increased seasonal usage of the north and south sides of the island, and in 2020-2022, a large (approximately 30-40 individuals) group of sea otters (raft) took up residence off the east end. During 2023-2026 the east end raft disappeared, and sea otters returned to their historical habitat usage patterns at the west end of the island. Foraging data were collected from summer 2023 to winter 2026 on a total of 461 foraging dives in 32 foraging bouts, and the majority of identified prey on successful dives (n=325) were sea urchins (124) followed by snails (48), bivalves (41) and crabs (23). One lobster and one octopus were also identified among the sea otter prey items. We combined these data with data from 2020-2022 to estimate overall energy intake rates that averaged 7.7 kilocalories per minute (95-percent credible interval =6.6-9.1 kilocalories per minute). These results can be useful to the planning of future monitoring and research of sea otters at San Nicolas Island.